Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs720300 chr7:127607474 A/G 1.31E-5 507 21.7 26.77 14.32 KM Plot
LGG rs72244006 chr10:27418647 TAAAAA/T 3.6E-5 494 25.27 19.6 19.15 KM Plot
LGG rs72443690 chr14:24422377 GA/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs72499622 chr3:194785978 C/T 4.11E-6 500 21.6 25.83 5.17 KM Plot
LGG rs72709664 chr9:33623177 C/A 1.5E-6 503 22.57 22.87 8.07 KM Plot
LGG rs72713672 chr14:102162027 A/G 7.34E-13 502 21.7 27.3 5.4 KM Plot
LGG rs72713674 chr14:102163814 C/T 5.66E-13 507 21.7 26.6 5.4 KM Plot
LGG rs72713692 chr14:102172042 C/A 6.81E-13 502 21.7 27.6 5.4 KM Plot
LGG rs72713694 chr14:102172082 A/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72713695 chr14:102172728 C/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72713697 chr14:102172989 A/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72713698 chr14:102173919 A/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72713700 chr14:102175759 C/T 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72713702 chr14:102176859 A/G 7.03E-13 502 21.7 27.6 5.4 KM Plot
LGG rs72715603 chr14:102178145 C/T 6.22E-13 505 21.7 28.72 5.4 KM Plot